refactor(core): use manual upgrade to replace auto migration when web setup (#5022)

1. Split logic in `packages/common/infra/src/blocksuite/index.ts` to multiple single files
2. Move migration logic from setup to upgrade module, to prevent auto migration problems and loading problem

tools/@types/env/__all.d.ts

@@ -44,11 +44,6 @@ declare global {
         ): this;
       };
     };
-    $migrationDone: boolean | undefined;
-  }
-
-  interface WindowEventMap {
-    'migration-done': CustomEvent;
   }
 
   // eslint-disable-next-line no-var