diff --git a/blocksuite/affine/block-code/package.json b/blocksuite/affine/block-code/package.json
index e75765d8b..f3a5c11d4 100644
--- a/blocksuite/affine/block-code/package.json
+++ b/blocksuite/affine/block-code/package.json
@@ -28,7 +28,7 @@
     "@types/mdast": "^4.0.4",
     "lit": "^3.2.0",
     "minimatch": "^10.0.1",
-    "shiki": "^2.0.0",
+    "shiki": "^3.0.0",
     "zod": "^3.23.8"
   },
   "exports": {
diff --git a/blocksuite/affine/components/package.json b/blocksuite/affine/components/package.json
index 53380d58d..8900a354d 100644
--- a/blocksuite/affine/components/package.json
+++ b/blocksuite/affine/components/package.json
@@ -34,7 +34,7 @@
     "lit-html": "^3.2.1",
     "lodash.clonedeep": "^4.5.0",
     "remark-math": "^6.0.0",
-    "shiki": "^2.0.0",
+    "shiki": "^3.0.0",
     "yjs": "^13.6.21",
     "zod": "^3.23.8"
   },
diff --git a/yarn.lock b/yarn.lock
index ebe1907c9..c7c10f930 100644
--- a/yarn.lock
+++ b/yarn.lock
@@ -2263,7 +2263,7 @@ __metadata:
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     lit: "npm:^3.2.0"
     minimatch: "npm:^10.0.1"
-    shiki: "npm:^2.0.0"
+    shiki: "npm:^3.0.0"
     zod: "npm:^3.23.8"
   languageName: unknown
   linkType: soft
@@ -2689,7 +2689,7 @@ __metadata:
     lit-html: "npm:^3.2.1"
     lodash.clonedeep: "npm:^4.5.0"
     remark-math: "npm:^6.0.0"
-    shiki: "npm:^2.0.0"
+    shiki: "npm:^3.0.0"
     yjs: "npm:^13.6.21"
     zod: "npm:^3.23.8"
   languageName: unknown
@@ -11745,38 +11745,36 @@ __metadata:
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   linkType: hard
 
-"@shikijs/core@npm:2.5.0":
-  version: 2.5.0
-  resolution: "@shikijs/core@npm:2.5.0"
+"@shikijs/core@npm:3.1.0":
+  version: 3.1.0
+  resolution: "@shikijs/core@npm:3.1.0"
   dependencies:
-    "@shikijs/engine-javascript": "npm:2.5.0"
-    "@shikijs/engine-oniguruma": "npm:2.5.0"
-    "@shikijs/types": "npm:2.5.0"
+    "@shikijs/types": "npm:3.1.0"
     "@shikijs/vscode-textmate": "npm:^10.0.2"
     "@types/hast": "npm:^3.0.4"
-    hast-util-to-html: "npm:^9.0.4"
-  checksum: 10/de45cd5c38a375443e88107b4ef0892c764d485021665a22a52d429500d20a9c77464d50dd8cdf8b5bdd6f0082a0ca50e048f1ccca9241e6e087ad7d7e906cbb
+    hast-util-to-html: "npm:^9.0.5"
+  checksum: 10/63606c6cb450be94b69215eb2ff153077465d9bd26d0fb98ae97229a9c586195ae3b8c13c021848668725d9cd4fa48b123bb1aec25b138c9f13c600925351f6f
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-"@shikijs/engine-javascript@npm:2.5.0":
-  version: 2.5.0
-  resolution: "@shikijs/engine-javascript@npm:2.5.0"
+"@shikijs/engine-javascript@npm:3.1.0":
+  version: 3.1.0
+  resolution: "@shikijs/engine-javascript@npm:3.1.0"
   dependencies:
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+    "@shikijs/types": "npm:3.1.0"
     "@shikijs/vscode-textmate": "npm:^10.0.2"
-    oniguruma-to-es: "npm:^3.1.0"
-  checksum: 10/30f4dd19150cf1f61f7fca1f58f8d35ad4e32dcd49726b49eb37da1f2c133ca49c01ca506551ce3782cbcaf2e528bc0f350176ae2a0f90a55fb7eb74c7e02094
+    oniguruma-to-es: "npm:^3.1.1"
+  checksum: 10/d2bc2002e8eba5ea6d83c55bcdfd8eb3cc8eef198f7afc377b3c0ed970891c807c3828e6a231f2f1d702d68c38e4cf1143abbc87bc8e6aceda03ee5df18601ef
   languageName: node
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-"@shikijs/engine-oniguruma@npm:2.5.0":
-  version: 2.5.0
-  resolution: "@shikijs/engine-oniguruma@npm:2.5.0"
+"@shikijs/engine-oniguruma@npm:3.1.0":
+  version: 3.1.0
+  resolution: "@shikijs/engine-oniguruma@npm:3.1.0"
   dependencies:
-    "@shikijs/types": "npm:2.5.0"
+    "@shikijs/types": "npm:3.1.0"
     "@shikijs/vscode-textmate": "npm:^10.0.2"
-  checksum: 10/53e85030f4d3992eb5f8bc32af234e33fac0abe017475572f7d41df40327fce8450ec0253002100187139ac1b8b100759059cd880c426cdff257ed0b2bc9f41a
+  checksum: 10/7e10a925cbc858f2a28b94921332e6fee0cf9524c7174e6be0de0a27e33ec1b7ff82d9a4c426432dacd2080424da85ad20a5513c90a2d1a00b5fc0d0f8461035
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@@ -11790,21 +11788,21 @@ __metadata:
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-"@shikijs/langs@npm:2.5.0":
-  version: 2.5.0
-  resolution: "@shikijs/langs@npm:2.5.0"
+"@shikijs/langs@npm:3.1.0":
+  version: 3.1.0
+  resolution: "@shikijs/langs@npm:3.1.0"
   dependencies:
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-  checksum: 10/6d50b5080e6d521a021221f32b93be07eb007e6806ba4d149cbc5fb6566b71145a3edcc49fbdc6fc9a10eeef543d4e0088916bd01b29eeddb054f13b89c86710
+    "@shikijs/types": "npm:3.1.0"
+  checksum: 10/66dc3bc52efefb8d3b37a8622f76a5c240c1025d9b51e340fa055419d0b864204c8e59aa844d684988970c2de97dcf1244ed70c304852714821cbc578fab6d31
   languageName: node
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-"@shikijs/themes@npm:2.5.0":
-  version: 2.5.0
-  resolution: "@shikijs/themes@npm:2.5.0"
+"@shikijs/themes@npm:3.1.0":
+  version: 3.1.0
+  resolution: "@shikijs/themes@npm:3.1.0"
   dependencies:
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-  checksum: 10/0f979e58df8a363dd965cd0aba9106a020a21d90d261f037a3b9d433c896fa748d5defa761f5916eb8c89bf7fd41ba53d53e520cfaecbf307bdde17aefce33ed
+    "@shikijs/types": "npm:3.1.0"
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@@ -11818,13 +11816,13 @@ __metadata:
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-"@shikijs/types@npm:2.5.0":
-  version: 2.5.0
-  resolution: "@shikijs/types@npm:2.5.0"
+"@shikijs/types@npm:3.1.0":
+  version: 3.1.0
+  resolution: "@shikijs/types@npm:3.1.0"
   dependencies:
     "@shikijs/vscode-textmate": "npm:^10.0.2"
     "@types/hast": "npm:^3.0.4"
-  checksum: 10/d285f7422fc8eca0d92b5d2438f8fa6a74423b000ef9e2abdd15dd85fb0062e8fe8db6ea6af7a9f21a7d322845c5ad39a9ab7e272ff240358ad4a533a7e4df1d
+  checksum: 10/012cc877376c93ceab13b440cf07d920b7c372174e326be06998f9744414bce20bd3676851fef0f9ee245466341f9102b6b15ca94f8eaae80c87aa20abf5a497
   languageName: node
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@@ -21749,7 +21747,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"hast-util-to-html@npm:^9.0.0, hast-util-to-html@npm:^9.0.4":
+"hast-util-to-html@npm:^9.0.0, hast-util-to-html@npm:^9.0.5":
   version: 9.0.5
   resolution: "hast-util-to-html@npm:9.0.5"
   dependencies:
@@ -26692,7 +26690,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"oniguruma-to-es@npm:^3.1.0":
+"oniguruma-to-es@npm:^3.1.1":
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   resolution: "oniguruma-to-es@npm:3.1.1"
   dependencies:
@@ -30119,19 +30117,19 @@ __metadata:
   languageName: node
   linkType: hard
 
-"shiki@npm:^2.0.0":
-  version: 2.5.0
-  resolution: "shiki@npm:2.5.0"
+"shiki@npm:^3.0.0":
+  version: 3.1.0
+  resolution: "shiki@npm:3.1.0"
   dependencies:
-    "@shikijs/core": "npm:2.5.0"
-    "@shikijs/engine-javascript": "npm:2.5.0"
-    "@shikijs/engine-oniguruma": "npm:2.5.0"
-    "@shikijs/langs": "npm:2.5.0"
-    "@shikijs/themes": "npm:2.5.0"
-    "@shikijs/types": "npm:2.5.0"
+    "@shikijs/core": "npm:3.1.0"
+    "@shikijs/engine-javascript": "npm:3.1.0"
+    "@shikijs/engine-oniguruma": "npm:3.1.0"
+    "@shikijs/langs": "npm:3.1.0"
+    "@shikijs/themes": "npm:3.1.0"
+    "@shikijs/types": "npm:3.1.0"
     "@shikijs/vscode-textmate": "npm:^10.0.2"
     "@types/hast": "npm:^3.0.4"
-  checksum: 10/2397c19958f6b1aeb17f65aa014a3c2e05c01c69c152b85c1eeeb9a3b66d0df35e9702a935077207a13a1be39bdcc4e55076e59fabfb155cd513f47007500dcc
+  checksum: 10/4bf64a14e58f825ae398e740269f543ef87d4af58a9ae18e3d77a3bf37242ff63f8b6c6d0119fad970576169ec23414d3497f2ec51fe3d1c7267288e65d4518c
   languageName: node
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